Haplotype Class Reference

#include <Haplotype.h>

Inheritance diagram for Haplotype:

List of all members.

Public Types
enum	RECOMBINATION_INFO {   MISSING_INFO = '.', NO_INFORMATION = ':', NO_RECOMBINATION = '|', MATERNAL_RECOMBINATION = '/',   PATERNAL_RECOMBINATION = '\\', BOTH_RECOMBINE = '+' }
Public Member Functions
	Haplotype ()
	Haplotype (const char *h)
	Haplotype (const std::string &h)
bool	isMissing (void) const
void	setMissing (void)
void	set (const char *haplotype)
void	set (const std::string &haplotype)
const std::string	get (void) const
bool	operator< (const Data &b) const
bool	operator== (const Data &b) const
const DATATYPE	getDataType (void) const
virtual Haplotype *	clone () const
const std::string	getAlleleFromMom (void) const
const std::string	getAlleleFromDad (void) const
Haplotype::RECOMBINATION_INFO	getRecombinationInfo (void) const
Static Public Member Functions
static void	addHaplotypeMissingValue (std::string value)
static bool	isMissingValue (std::string value)
Private Member Functions
unsigned char	_getRecombinationInfoSortOrder (void) const
Private Attributes
bool	_isMissing
std::string	_haplotype
RECOMBINATION_INFO	_recombination
Static Private Attributes
static std::set< std::string >	_haplotypeMissingValue

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Member Enumeration Documentation

enum Haplotype::RECOMBINATION_INFO

Enumerator: MISSING_INFO  NO_INFORMATION  NO_RECOMBINATION  MATERNAL_RECOMBINATION  PATERNAL_RECOMBINATION  BOTH_RECOMBINE

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Constructor & Destructor Documentation

Haplotype::Haplotype (   )  [inline]

Haplotype::Haplotype (  const char *  h  )  [inline]

Haplotype::Haplotype (  const std::string &  h  )  [inline]

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Member Function Documentation

unsigned char Haplotype::_getRecombinationInfoSortOrder (  void   )  const [private]

static void Haplotype::addHaplotypeMissingValue (  std::string  value  )  [inline, static]

Haplotype * Haplotype::clone (   )  const [virtual]

Implements Data.

const std::string Haplotype::get (  void   )  const [virtual]

Implements Data.

const std::string Haplotype::getAlleleFromDad (  void   )  const

const std::string Haplotype::getAlleleFromMom (  void   )  const

const DATATYPE Haplotype::getDataType (  void   )  const [inline, virtual]

Implements Data.

Haplotype::RECOMBINATION_INFO Haplotype::getRecombinationInfo (  void   )  const

bool Haplotype::isMissing (  void   )  const [inline, virtual]

Implements Data.

bool Haplotype::isMissingValue (  std::string  value  )  [static]

bool Haplotype::operator< (  const Data &  b  )  const [virtual]

Implements Data.

bool Haplotype::operator== (  const Data &  b  )  const [virtual]

Implements Data.

void Haplotype::set (  const std::string &  haplotype  )  [virtual]

Implements Data.

void Haplotype::set (  const char *  haplotype  )  [virtual]

Implements Data.

void Haplotype::setMissing (  void   )  [virtual]

Implements Data.

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Member Data Documentation

std::string Haplotype::_haplotype [private]

std::set< std::string > Haplotype::_haplotypeMissingValue [static, private]

bool Haplotype::_isMissing [private]

RECOMBINATION_INFO Haplotype::_recombination [private]

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The documentation for this class was generated from the following files:

• Haplotype.h
• Haplotype.cpp

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